Navigation
index
modules
|
riboraptor 0.2.2 documentation
»
Contents
Installation
Example Workflow
Manual
API Usage
Scores
riboraptor
History
Contributing
Credits
Docs
Index
Index
B
|
C
|
D
|
E
|
G
|
H
|
I
|
K
|
L
|
M
|
N
|
P
|
Q
|
R
|
S
|
U
|
W
B
bam_to_bedgraph() (in module riboraptor.count)
bedgraph_to_bigwig() (in module riboraptor.count)
C
calculate_cdf() (in module riboraptor.statistics)
check_file_exists() (in module riboraptor.helpers)
codon_to_anticodon() (in module riboraptor.helpers)
collapse_bed_intervals() (in module riboraptor.helpers)
collapse_gene_coverage_to_metagene() (in module riboraptor.count)
complete_gene_fasta() (in module riboraptor.fasta)
count_feature_genewise() (in module riboraptor.count)
count_reads_bed() (in module riboraptor.count)
count_reads_in_features() (in module riboraptor.count)
count_reads_per_gene() (in module riboraptor.count)
count_utr5_utr3_cds() (in module riboraptor.count)
create_ideal_periodic_signal() (in module riboraptor.helpers)
create_wavelet() (in module riboraptor.plotting)
D
deseq2_normalization() (in module riboraptor.normalization)
determine_cell_type() (in module riboraptor.utils)
diff_region_enrichment() (in module riboraptor.count)
dtw() (in module riboraptor.dtw)
E
export_all_fasta() (in module riboraptor.fasta)
export_fasta_from_bed() (in module riboraptor.fasta)
export_gene_coverages() (in module riboraptor.count)
export_metagene_coverage() (in module riboraptor.count)
extract_uniq_mapping_reads() (in module riboraptor.count)
G
gene_coverage() (in module riboraptor.count)
gene_coverage_sum() (in module riboraptor.count)
get_cell_line_or_tissue() (in module riboraptor.utils)
get_chromosomes (riboraptor.wig.WigReader attribute)
get_enrichment_cds_stats() (in module riboraptor.utils)
get_fasta_sequence() (in module riboraptor.count)
(in module riboraptor.fasta)
get_fragment_enrichment_score() (in module riboraptor.utils)
get_path() (in module riboraptor.dtw)
get_periodicity() (in module riboraptor.coherence)
get_region_sizes() (in module riboraptor.count)
get_strain_type() (in module riboraptor.utils)
get_strandedness() (in module riboraptor.helpers)
get_tissue_type() (in module riboraptor.utils)
H
htseq_to_cpm() (in module riboraptor.count)
htseq_to_tpm() (in module riboraptor.count)
I
identify_peaks() (in module riboraptor.helpers)
interval_coverage() (in module riboraptor.count)
K
KDE() (in module riboraptor.statistics)
KS_test() (in module riboraptor.statistics)
L
list_to_ranges() (in module riboraptor.helpers)
load_pickle() (in module riboraptor.helpers)
load_tpm() (in module riboraptor.utils)
M
mapping_reads_summary() (in module riboraptor.count)
millify() (in module riboraptor.helpers)
mkdir_p() (in module riboraptor.helpers)
N
naive_periodicity() (in module riboraptor.coherence)
P
pad_five_prime_or_truncate() (in module riboraptor.helpers)
pad_or_truncate() (in module riboraptor.helpers)
parse_star_logs() (in module riboraptor.helpers)
path_leaf() (in module riboraptor.helpers)
pickle_bed_file() (in module riboraptor.count)
plot_featurewise_barplot() (in module riboraptor.plotting)
plot_framewise_counts() (in module riboraptor.plotting)
plot_read_counts() (in module riboraptor.plotting)
plot_read_length_dist() (in module riboraptor.plotting)
plot_warped_timeseries() (in module riboraptor.dtw)
Q
query() (riboraptor.wig.WigReader method)
R
r2() (in module riboraptor.helpers)
read_enrichment() (in module riboraptor.count)
read_htseq() (in module riboraptor.count)
read_length_distribution() (in module riboraptor.count)
riboraptor (module)
riboraptor.cli (module)
riboraptor.coherence (module)
riboraptor.count (module)
riboraptor.download (module)
riboraptor.dtw (module)
riboraptor.fasta (module)
riboraptor.genome (module)
riboraptor.helpers (module)
riboraptor.normalization (module)
riboraptor.plotting (module)
riboraptor.statistics (module)
riboraptor.utils (module)
riboraptor.wig (module)
round_to_nearest() (in module riboraptor.helpers)
run_download_sra_script() (in module riboraptor.download)
S
series_cdf() (in module riboraptor.statistics)
set_xrotation() (in module riboraptor.helpers)
setup_axis() (in module riboraptor.plotting)
setup_plot() (in module riboraptor.plotting)
summarize_counters() (in module riboraptor.helpers)
summary_starlogs_over_runs() (in module riboraptor.utils)
summary_stats_two_arrays_welch() (in module riboraptor.helpers)
U
unique_mapping_reads_count() (in module riboraptor.count)
W
WigReader (class in riboraptor.wig)
Navigation
index
modules
|
riboraptor 0.2.2 documentation
»